IL_9R9O_158

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_158 not in the Motif Atlas

Homologous match to IL_9PN5_171

Geometric discrepancy: 0.1552

The information below is about IL_9PN5_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9R9O|1|C2|A|550
9R9O|1|C2|G|551
9R9O|1|C2|G|552
9R9O|1|C2|G|553
9R9O|1|C2|C|554
9R9O|1|C2|A|555
9R9O|1|C2|A|556
9R9O|1|C2|G|557
*
9R9O|1|C2|C|587
9R9O|1|C2|U|588

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A