IL_9RHU_030
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- AG(OMG)GCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_030 not in the Motif Atlas
- Homologous match to IL_9PN5_171
- Geometric discrepancy: 0.0574
- The information below is about IL_9PN5_171
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 14
Unit IDs
9RHU|1|A1|A|600
9RHU|1|A1|G|601
9RHU|1|A1|OMG|602
9RHU|1|A1|G|603
9RHU|1|A1|C|604
9RHU|1|A1|A|605
9RHU|1|A1|A|606
9RHU|1|A1|G|607
*
9RHU|1|A1|C|637
9RHU|1|A1|U|638
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein eS30
- Chain I1
- mRNA containing F2A sequence
- Chain N1
- 40S ribosomal protein S2
- Chain U1
- Small ribosomal subunit protein uS4
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