IL_9RHU_138

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9RHU|1|A3|G|743, 9RHU|1|A3|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_138 not in the Motif Atlas

Geometric match to IL_8GLP_040

Geometric discrepancy: 0.0858

The information below is about IL_8GLP_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.3

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9RHU|1|A3|G|740
9RHU|1|A3|A|741
9RHU|1|A3|A|742
9RHU|1|A3|G|743
9RHU|1|A3|G|744
9RHU|1|A3|U|745
9RHU|1|A3|G|746
9RHU|1|A3|G|747
*
9RHU|1|A3|U|808
9RHU|1|A3|G|809
9RHU|1|A3|U|810
9RHU|1|A3|U|811
9RHU|1|A3|A|812
9RHU|1|A3|C|813
9RHU|1|A3|A|814
9RHU|1|A3|G|815
9RHU|1|A3|C|816

Current chains

Chain A3

28S rRNA

Nearby chains

Chain I2

60S ribosomal protein L14

Chain O2

Large ribosomal subunit protein eL20