IL_9RHU_213

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9RHU|1|A3|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_213 not in the Motif Atlas

Homologous match to IL_8GLP_108

Geometric discrepancy: 0.042

The information below is about IL_8GLP_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9RHU|1|A3|C|2710
9RHU|1|A3|G|2711
9RHU|1|A3|U|2712
9RHU|1|A3|A|2713
9RHU|1|A3|A|2714
9RHU|1|A3|C|2715
*
9RHU|1|A3|G|2720
9RHU|1|A3|G|2721
9RHU|1|A3|A|2722
9RHU|1|A3|U|2723
9RHU|1|A3|A|2724
9RHU|1|A3|A|2725
9RHU|1|A3|G|2726

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain k2

60S ribosomal protein L37a

Chain l1

Small ribosomal subunit protein eS32