IL_9RHU_218

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

9RHU|1|A3|OMC|3433

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_218 not in the Motif Atlas

Homologous match to IL_8GLP_116

Geometric discrepancy: 0.0592

The information below is about IL_8GLP_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9RHU|1|A3|C|3432
9RHU|1|A3|OMC|3433
9RHU|1|A3|A|3434
9RHU|1|A3|G|3435
*
9RHU|1|A3|C|3481
9RHU|1|A3|G|3482

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain D3

Large ribosomal subunit protein uL2