IL_9RHU_228

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9RHU|1|A3|A|4131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_228 not in the Motif Atlas

Homologous match to IL_8GLP_131

Geometric discrepancy: 0.0781

The information below is about IL_8GLP_131

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9RHU|1|A3|G|3648
9RHU|1|A3|A|3649
*
9RHU|1|A3|U|4130
9RHU|1|A3|A|4131
9RHU|1|A3|C|4132
9RHU|1|A3|C|4133

Current chains

Chain A3

28S rRNA

Nearby chains

Chain D3

Large ribosomal subunit protein uL2

Chain G2

Choriogonadotropin subunit beta variant 1,Genome polyprotein,Genome polyprotein

Chain K1

Transfer RNA; tRNA