IL_9RVC_033
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUAG*CGCAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 9RVC|1|A|A|710
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RVC_033 not in the Motif Atlas
- Geometric match to IL_8B0X_034
- Geometric discrepancy: 0.093
- The information below is about IL_8B0X_034
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9RVC|1|A|U|692
9RVC|1|A|G|693
9RVC|1|A|U|694
9RVC|1|A|A|695
9RVC|1|A|G|696
*
9RVC|1|A|C|707
9RVC|1|A|G|708
9RVC|1|A|C|709
9RVC|1|A|A|710
9RVC|1|A|G|711
9RVC|1|A|A|712
9RVC|1|A|G|713
9RVC|1|A|A|714
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- Small ribosomal subunit protein uS11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: