IL_9RVC_149

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9RVC|1|a|A|2466, 9RVC|1|a|C|2467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RVC_149 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.4287

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9RVC|1|a|G|2097
9RVC|1|a|A|2098
*
9RVC|1|a|U|2465
9RVC|1|a|A|2466
9RVC|1|a|C|2467
9RVC|1|a|C|2468

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2