IL_9SS4_023

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9SS4|1|D2|U|846, 9SS4|1|D2|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_023 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1394

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

9SS4|1|D2|A|844
9SS4|1|D2|A|845
9SS4|1|D2|U|846
9SS4|1|D2|U|847
9SS4|1|D2|C|848
*
9SS4|1|D2|G|930
9SS4|1|D2|U|931
9SS4|1|D2|U|932
9SS4|1|D2|A|933
9SS4|1|D2|U|934

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B3

Large ribosomal subunit protein uL30