IL_9SS4_066

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9SS4|1|D2|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS4_066 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.0873

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9SS4|1|D2|C|1686
9SS4|1|D2|G|1687
9SS4|1|D2|U|1688
9SS4|1|D2|A|1689
9SS4|1|D2|A|1690
9SS4|1|D2|C|1691
*
9SS4|1|D2|G|1696
9SS4|1|D2|G|1697
9SS4|1|D2|A|1698
9SS4|1|D2|G|1699
9SS4|1|D2|A|1700
9SS4|1|D2|A|1701
9SS4|1|D2|G|1702

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2