IL_9SS4_110
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SS4_110 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1033
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9SS4|1|D3|C|71
9SS4|1|D3|G|72
9SS4|1|D3|A|73
9SS4|1|D3|U|74
9SS4|1|D3|G|75
9SS4|1|D3|G|76
9SS4|1|D3|U|77
9SS4|1|D3|A|78
9SS4|1|D3|G|79
*
9SS4|1|D3|C|97
9SS4|1|D3|G|98
9SS4|1|D3|A|99
9SS4|1|D3|G|100
9SS4|1|D3|A|101
9SS4|1|D3|G|102
9SS4|1|D3|U|103
9SS4|1|D3|A|104
9SS4|1|D3|G|105
Current chains
- Chain D3
- 5S Ribosomal RNA
Nearby chains
- Chain BP
- 50S ribosomal protein L16
- Chain BY
- Large ribosomal subunit protein bL25
- Chain D2
- Large subunit ribosomal RNA; LSU rRNA
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