IL_9SUM_198

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

9SUM|1|CA|G|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SUM_198 not in the Motif Atlas

Homologous match to IL_9H3G_216

Geometric discrepancy: 0.2031

The information below is about IL_9H3G_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06668.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9SUM|1|CA|A|1194
9SUM|1|CA|U|1195
9SUM|1|CA|A|1196
9SUM|1|CA|A|1197
9SUM|1|CA|G|1198
9SUM|1|CA|G|1199
9SUM|1|CA|A|1200
9SUM|1|CA|U|1201
9SUM|1|CA|U|1202
9SUM|1|CA|G|1203
*
9SUM|1|CA|C|1222
9SUM|1|CA|U|1223
9SUM|1|CA|U|1224
9SUM|1|CA|G|1225
9SUM|1|CA|A|1226
9SUM|1|CA|U|1227
9SUM|1|CA|U|1228
9SUM|1|CA|U|1229

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZC

40S ribosomal protein S10-A

Chain ZV

Small ribosomal subunit protein uS14