IL_9SUM_202

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UGCAUG*UGAUG

Length

11 nucleotides

Bulged bases

9SUM|1|CA|C|1244, 9SUM|1|CA|G|1411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SUM_202 not in the Motif Atlas

Geometric match to IL_9PN5_205

Geometric discrepancy: 0.046

The information below is about IL_9PN5_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|U|1242
9SUM|1|CA|G|1243
9SUM|1|CA|C|1244
9SUM|1|CA|A|1245
9SUM|1|CA|U|1246
9SUM|1|CA|G|1247
*
9SUM|1|CA|U|1410
9SUM|1|CA|G|1411
9SUM|1|CA|A|1412
9SUM|1|CA|U|1413
9SUM|1|CA|G|1414

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZC

40S ribosomal protein S10-A

Chain ZL

Small ribosomal subunit protein uS10

Chain ZV

Small ribosomal subunit protein uS14

Chain v

Small ribosomal subunit protein uS3