IL_9SYR_014

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

9SYR|1|L1|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_014 not in the Motif Atlas

Homologous match to IL_8GLP_017

Geometric discrepancy: 0.1074

The information below is about IL_8GLP_017

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9SYR|1|L1|C|339
9SYR|1|L1|C|340
9SYR|1|L1|G|341
9SYR|1|L1|G|342
*
9SYR|1|L3|C|32
9SYR|1|L3|G|33

Current chains

Chain L1

28S rRNA

Chain L3

5.8S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein eL37

Chain LH

60S ribosomal protein L15

Chain LP

Large ribosomal subunit protein eL13

Chain Lc

60S ribosomal protein L4