IL_9SYR_191

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_191 not in the Motif Atlas

Homologous match to IL_9PN5_171

Geometric discrepancy: 0.0948

The information below is about IL_9PN5_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9SYR|1|S1|A|599
9SYR|1|S1|G|600
9SYR|1|S1|OMG|601
9SYR|1|S1|G|602
9SYR|1|S1|C|603
9SYR|1|S1|A|604
9SYR|1|S1|A|605
9SYR|1|S1|G|606
*
9SYR|1|S1|C|636
9SYR|1|S1|U|637

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S9

Chain Sn

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Sv

40S ribosomal protein S2