IL_9T0Z_037

3D structure

PDB id

9T0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

HPFcold Bound Hibernating C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGUAG*CGUAGAUA

Length

13 nucleotides

Bulged bases

9T0Z|1|A|A|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T0Z_037 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.0683

The information below is about IL_8B0X_034

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9T0Z|1|A|U|681
9T0Z|1|A|G|682
9T0Z|1|A|U|683
9T0Z|1|A|A|684
9T0Z|1|A|G|685
*
9T0Z|1|A|C|696
9T0Z|1|A|G|697
9T0Z|1|A|U|698
9T0Z|1|A|A|699
9T0Z|1|A|G|700
9T0Z|1|A|A|701
9T0Z|1|A|U|702
9T0Z|1|A|A|703

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11