IL_9T4R_030

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AAGAG*UGGU

Length

9 nucleotides

Bulged bases

9T4R|1|A|A|673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_030 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1983

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9T4R|1|A|A|670
9T4R|1|A|A|671
9T4R|1|A|G|672
9T4R|1|A|A|673
9T4R|1|A|G|674
*
9T4R|1|A|U|748
9T4R|1|A|G|749
9T4R|1|A|G|750
9T4R|1|A|U|751

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS6

Chain O

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein bS18