IL_9T4R_061
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T4R_061 not in the Motif Atlas
- Geometric match to IL_8B0X_062
- Geometric discrepancy: 0.195
- The information below is about IL_8B0X_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.3
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
9T4R|1|A|C|1440
9T4R|1|A|C|1441
9T4R|1|A|G|1442
9T4R|1|A|A|1443
9T4R|1|A|A|1444
9T4R|1|A|G|1445
*
9T4R|1|A|C|1477
9T4R|1|A|G|1478
9T4R|1|A|A|1479
9T4R|1|A|A|1480
9T4R|1|A|G|1481
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- Small ribosomal subunit protein bS20
- Chain U
- Large ribosomal subunit protein uL14
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: