IL_9T4R_174

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

9T4R|1|a|U|2714, 9T4R|1|a|A|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_174 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1571

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9T4R|1|a|U|2712
9T4R|1|a|G|2713
9T4R|1|a|U|2714
9T4R|1|a|A|2715
9T4R|1|a|C|2716
*
9T4R|1|a|G|2743
9T4R|1|a|G|2744
9T4R|1|a|U|2745
9T4R|1|a|A|2746
9T4R|1|a|G|2747

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19