IL_9TZ5_012
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 9TZ5|1|a|U|509, 9TZ5|1|a|A|513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TZ5_012 not in the Motif Atlas
- Geometric match to IL_8B0X_075
- Geometric discrepancy: 0.075
- The information below is about IL_8B0X_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9TZ5|1|a|G|486
9TZ5|1|a|A|487
9TZ5|1|a|A|488
9TZ5|1|a|C|489
*
9TZ5|1|a|G|501
9TZ5|1|a|A|502
9TZ5|1|a|G|503
9TZ5|1|a|U|504
9TZ5|1|a|G|505
9TZ5|1|a|A|506
9TZ5|1|a|A|507
9TZ5|1|a|A|508
9TZ5|1|a|U|509
9TZ5|1|a|A|510
9TZ5|1|a|G|511
9TZ5|1|a|A|512
9TZ5|1|a|A|513
9TZ5|1|a|C|514
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL24
- Chain j
- Large ribosomal subunit protein uL22
Coloring options: