IL_9TZ5_017
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9TZ5|1|a|G|808, 9TZ5|1|a|G|812
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TZ5_017 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1284
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9TZ5|1|a|G|681
9TZ5|1|a|A|682
9TZ5|1|a|A|683
9TZ5|1|a|A|684
9TZ5|1|a|C|685
*
9TZ5|1|a|G|806
9TZ5|1|a|A|807
9TZ5|1|a|G|808
9TZ5|1|a|A|809
9TZ5|1|a|U|810
9TZ5|1|a|A|811
9TZ5|1|a|G|812
9TZ5|1|a|C|813
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain k
- Large ribosomal subunit protein uL15
- Chain w
- Large ribosomal subunit protein uL4
Coloring options: