IL_9TZ5_085

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9TZ5|1|a|U|2148

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_085 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.2749

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9TZ5|1|a|C|2145
9TZ5|1|a|U|2146
9TZ5|1|a|U|2147
9TZ5|1|a|U|2148
9TZ5|1|a|G|2149
9TZ5|1|a|A|2150
9TZ5|1|a|A|2151
9TZ5|1|a|G|2152
*
9TZ5|1|a|U|2171
9TZ5|1|a|G|2172
9TZ5|1|a|G|2173
9TZ5|1|a|A|2174
9TZ5|1|a|G|2175

Current chains

Chain a

23S ribosomal RNA

Nearby chains