IL_9TZ5_106

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9TZ5|1|a|U|2705, 9TZ5|1|a|U|2706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_106 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.171

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9TZ5|1|a|U|2703
9TZ5|1|a|G|2704
9TZ5|1|a|U|2705
9TZ5|1|a|U|2706
9TZ5|1|a|C|2707
*
9TZ5|1|a|G|2734
9TZ5|1|a|G|2735
9TZ5|1|a|U|2736
9TZ5|1|a|A|2737
9TZ5|1|a|G|2738

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein bL19

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17