IL_9UZL_067

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

UGCAUG*UGAUG

Length

11 nucleotides

Bulged bases

9UZL|1|2|C|1327, 9UZL|1|2|G|1493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|U|1325
9UZL|1|2|G|1326
9UZL|1|2|C|1327
9UZL|1|2|A|1328
9UZL|1|2|U|1329
9UZL|1|2|G|1330
*
9UZL|1|2|U|1492
9UZL|1|2|G|1493
9UZL|1|2|A|1494
9UZL|1|2|U|1495
9UZL|1|2|G|1496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain M

Small ribosomal subunit protein eS10

Chain W

Small ribosomal subunit protein uS10

Chain e

Small ribosomal subunit protein uS14