IL_9UZM_032

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9UZM_032 not in the Motif Atlas

Homologous match to IL_9PN5_171

Geometric discrepancy: 0.1976

The information below is about IL_9PN5_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9UZM|1|2|A|589
9UZM|1|2|G|590
9UZM|1|2|G|591
9UZM|1|2|G|592
9UZM|1|2|C|593
9UZM|1|2|A|594
9UZM|1|2|A|595
9UZM|1|2|G|596
*
9UZM|1|2|C|626
9UZM|1|2|U|627

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

Small ribosomal subunit protein uS4

Chain i

Small ribosomal subunit protein eS30