IL_9VMA_001

3D structure

PDB id

9VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

a protein complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGUGUG*UUAUAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VMA_001 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.276

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9VMA|1|G|G|21
9VMA|1|G|G|22
9VMA|1|G|U|23
9VMA|1|G|G|24
9VMA|1|G|U|25
9VMA|1|G|G|26
*
9VMA|1|G|U|136
9VMA|1|G|U|137
9VMA|1|G|A|138
9VMA|1|G|U|139
9VMA|1|G|A|140
9VMA|1|G|C|141

Current chains

Chain G

RNA (188-MER)

Nearby chains

Chain A

RNA-dependent DNA polymerase