IL_9VTH_033

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_033 not in the Motif Atlas

Homologous match to IL_9PN5_171

Geometric discrepancy: 0.0666

The information below is about IL_9PN5_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9VTH|1|11|A|553
9VTH|1|11|G|554
9VTH|1|11|G|555
9VTH|1|11|G|556
9VTH|1|11|C|557
9VTH|1|11|A|558
9VTH|1|11|A|559
9VTH|1|11|G|560
*
9VTH|1|11|C|590
9VTH|1|11|U|591

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S9-2-like

Chain SD

Small ribosomal subunit protein uS5

Chain Se

40S ribosomal protein S30