IL_9VTH_064

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAAGGAUUG*CUUGAUUC

Length

18 nucleotides

Bulged bases

9VTH|1|11|G|1231

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_064 not in the Motif Atlas

Homologous match to IL_9H3G_216

Geometric discrepancy: 0.1184

The information below is about IL_9H3G_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06668.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9VTH|1|11|G|1227
9VTH|1|11|U|1228
9VTH|1|11|A|1229
9VTH|1|11|A|1230
9VTH|1|11|G|1231
9VTH|1|11|G|1232
9VTH|1|11|A|1233
9VTH|1|11|U|1234
9VTH|1|11|U|1235
9VTH|1|11|G|1236
*
9VTH|1|11|C|1255
9VTH|1|11|U|1256
9VTH|1|11|U|1257
9VTH|1|11|G|1258
9VTH|1|11|A|1259
9VTH|1|11|U|1260
9VTH|1|11|U|1261
9VTH|1|11|C|1262

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S29

Chain SU

40S ribosomal protein S10-1

Chain SV

40S ribosomal protein S12

Chain Sf

Ubiquitin-40S ribosomal protein S27a-like