IL_9VTH_109

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCUAGUAAC*GCGAACCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_109 not in the Motif Atlas

Homologous match to IL_9H3G_010

Geometric discrepancy: 0.0837

The information below is about IL_9H3G_010

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.4

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9VTH|1|14|C|80
9VTH|1|14|C|81
9VTH|1|14|U|82
9VTH|1|14|A|83
9VTH|1|14|G|84
9VTH|1|14|U|85
9VTH|1|14|A|86
9VTH|1|14|A|87
9VTH|1|14|C|88
*
9VTH|1|14|G|94
9VTH|1|14|C|95
9VTH|1|14|G|96
9VTH|1|14|A|97
9VTH|1|14|A|98
9VTH|1|14|C|99
9VTH|1|14|C|100
9VTH|1|14|G|101

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LI

60s ribosomal protein l27a-3

Chain LS

60S ribosomal protein L13

Chain LU

Ribosomal protein L15

Chain LV

60S ribosomal protein L18-2

Chain Lp

60S ribosomal protein L44