IL_9VTH_142
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGGGUAA*UAAAUAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_142 not in the Motif Atlas
- Homologous match to IL_9H3G_044
- Geometric discrepancy: 0.0774
- The information below is about IL_9H3G_044
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.4
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|14|C|1003
9VTH|1|14|G|1004
9VTH|1|14|G|1005
9VTH|1|14|G|1006
9VTH|1|14|U|1007
9VTH|1|14|A|1008
9VTH|1|14|A|1009
*
9VTH|1|14|U|1064
9VTH|1|14|A|1065
9VTH|1|14|A|1066
9VTH|1|14|A|1067
9VTH|1|14|U|1068
9VTH|1|14|A|1069
9VTH|1|14|G|1070
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 12
- 5S ribosomal RNA; 5S rRNA
- Chain LJ
- 60S ribosomal protein L10
- Chain LK
- 60S ribosomal protein L5-like
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LX
- 60S ribosomal protein L18a
- Chain LY
- 60S ribosomal protein L21-1-like
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