IL_9VTH_152
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGCCAAAC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_152 not in the Motif Atlas
- Homologous match to IL_9H3G_055
- Geometric discrepancy: 0.1203
- The information below is about IL_9H3G_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 14
Unit IDs
9VTH|1|14|U|1184
9VTH|1|14|G|1185
9VTH|1|14|C|1186
9VTH|1|14|C|1187
9VTH|1|14|A|1188
9VTH|1|14|A|1189
9VTH|1|14|A|1190
9VTH|1|14|C|1191
*
9VTH|1|14|G|1337
9VTH|1|14|A|1338
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L13a-4
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LX
- 60S ribosomal protein L18a
- Chain Lh
- 60S ribosomal protein L35a-3-like
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