IL_9VTH_191

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

9VTH|1|14|C|2200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9VTH_191 not in the Motif Atlas

Homologous match to IL_8GLP_116

Geometric discrepancy: 0.1116

The information below is about IL_8GLP_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9VTH|1|14|C|2199
9VTH|1|14|C|2200
9VTH|1|14|A|2201
9VTH|1|14|G|2202
*
9VTH|1|14|C|2248
9VTH|1|14|G|2249

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 11

Small subunit ribosomal RNA; SSU rRNA

Chain LB

60S ribosomal protein L8-like