IL_9VTH_206
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGAG*CGAAAGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9VTH_206 not in the Motif Atlas
- Geometric match to IL_1MZP_003
- Geometric discrepancy: 0.1308
- The information below is about IL_1MZP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|14|G|2469
9VTH|1|14|G|2470
9VTH|1|14|A|2471
9VTH|1|14|G|2472
*
9VTH|1|14|C|2481
9VTH|1|14|G|2482
9VTH|1|14|A|2483
9VTH|1|14|A|2484
9VTH|1|14|A|2485
9VTH|1|14|G|2486
9VTH|1|14|U|2487
9VTH|1|14|G|2488
9VTH|1|14|A|2489
9VTH|1|14|A|2490
9VTH|1|14|A|2491
9VTH|1|14|U|2492
9VTH|1|14|A|2493
9VTH|1|14|C|2494
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 10
- RNA (204-MER)
- Chain LA
- Ribosomal protein
Coloring options: