IL_9W0N_025
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9W0N_025 not in the Motif Atlas
- Homologous match to IL_8B0X_090
- Geometric discrepancy: 0.1432
- The information below is about IL_8B0X_090
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|1|G|856
9W0N|1|1|G|857
9W0N|1|1|G|858
9W0N|1|1|G|859
9W0N|1|1|U|860
9W0N|1|1|A|861
9W0N|1|1|G|862
*
9W0N|1|1|C|915
9W0N|1|1|G|916
9W0N|1|1|A|917
9W0N|1|1|A|918
9W0N|1|1|U|919
9W0N|1|1|A|920
9W0N|1|1|C|921
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain m
- Large ribosomal subunit protein uL16
- Chain w
- Large ribosomal subunit protein bL27
- Chain z
- Large ribosomal subunit protein uL30
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