IL_9W0N_051

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9W0N|1|1|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9W0N_051 not in the Motif Atlas

Homologous match to IL_8B0X_116

Geometric discrepancy: 0.0965

The information below is about IL_8B0X_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9W0N|1|1|C|1437
9W0N|1|1|U|1438
9W0N|1|1|A|1439
9W0N|1|1|U|1440
*
9W0N|1|1|A|1551
9W0N|1|1|A|1552
9W0N|1|1|A|1553
9W0N|1|1|U|1554
9W0N|1|1|G|1555

Current chains

Chain 1

23S rRNA

Nearby chains