IL_9WNQ_030

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9WNQ|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WNQ_030 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1814

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9WNQ|1|A|U|662
9WNQ|1|A|A|663
9WNQ|1|A|G|664
9WNQ|1|A|A|665
9WNQ|1|A|G|666
*
9WNQ|1|A|U|740
9WNQ|1|A|G|741
9WNQ|1|A|G|742
9WNQ|1|A|A|743

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S6, fully modified isoform

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18