IL_9WW5_102

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9WW5|1|AA|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_102 not in the Motif Atlas

Homologous match to IL_8GLP_108

Geometric discrepancy: 0.0526

The information below is about IL_8GLP_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9WW5|1|AA|C|2867
9WW5|1|AA|G|2868
9WW5|1|AA|U|2869
9WW5|1|AA|A|2870
9WW5|1|AA|A|2871
9WW5|1|AA|C|2872
*
9WW5|1|AA|G|2877
9WW5|1|AA|G|2878
9WW5|1|AA|A|2879
9WW5|1|AA|U|2880
9WW5|1|AA|A|2881
9WW5|1|AA|A|2882
9WW5|1|AA|G|2883

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain Ap

60S ribosomal protein L41

Chain Ar

60S ribosomal protein L37a

Chain BA

Small subunit ribosomal RNA; SSU rRNA