IL_9WW5_144

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

ACAU(PSU)U*ACCA(PSU)

Length

11 nucleotides

Bulged bases

9WW5|1|AA|C|4670, 9WW5|1|AA|C|4671

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_144 not in the Motif Atlas

Homologous match to IL_8GLP_317

Geometric discrepancy: 0.2884

The information below is about IL_8GLP_317

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.2

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9WW5|1|AA|A|4624
9WW5|1|AA|C|4625
9WW5|1|AA|A|4626
9WW5|1|AA|U|4627
9WW5|1|AA|PSU|4628
9WW5|1|AA|U|4629
*
9WW5|1|AA|A|4669
9WW5|1|AA|C|4670
9WW5|1|AA|C|4671
9WW5|1|AA|A|4672
9WW5|1|AA|PSU|4673

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AX

60S ribosomal protein L23

Chain AY

60S ribosomal protein L24