IL_9WW5_183

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UGUG*UAG(A2M)

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_183 not in the Motif Atlas

Homologous match to IL_9H3G_166

Geometric discrepancy: 0.4661

The information below is about IL_9H3G_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9WW5|1|BA|U|152
9WW5|1|BA|G|153
9WW5|1|BA|U|154
9WW5|1|BA|G|155
*
9WW5|1|BA|U|163
9WW5|1|BA|A|164
9WW5|1|BA|G|165
9WW5|1|BA|A2M|166

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AY

60S ribosomal protein L24

Chain BW

40S ribosomal protein S6

Chain Bc

40S ribosomal protein S24