IL_9WW5_221

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AGG(PSU)(PSU)C*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9WW5_221 not in the Motif Atlas

Homologous match to IL_9SUM_183

Geometric discrepancy: 0.1233

The information below is about IL_9SUM_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.2

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|A|1042
9WW5|1|BA|G|1043
9WW5|1|BA|G|1044
9WW5|1|BA|PSU|1045
9WW5|1|BA|PSU|1046
9WW5|1|BA|C|1047
*
9WW5|1|BA|G|1071
9WW5|1|BA|U|1072
9WW5|1|BA|U|1073

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AD

60S ribosomal protein L8

Chain Ar

60S ribosomal protein L37a

Chain BR

40S ribosomal protein S26

Chain Ba

Small ribosomal subunit protein uS11