IL_9WW5_224
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9WW5_224 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3776
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9WW5|1|BA|C|1098
9WW5|1|BA|G|1099
9WW5|1|BA|A|1100
9WW5|1|BA|U|1101
9WW5|1|BA|G|1102
9WW5|1|BA|C|1103
*
9WW5|1|BA|G|1129
9WW5|1|BA|G|1130
9WW5|1|BA|G|1131
9WW5|1|BA|C|1132
9WW5|1|BA|A|1133
9WW5|1|BA|G|1134
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BC
- Small ribosomal subunit protein uS2
- Chain BD
- 40S ribosomal protein S3a
- Chain BR
- 40S ribosomal protein S26
- Chain BZ
- 40S ribosomal protein S13
- Chain Be
- 40S ribosomal protein S27
- Chain Bh
- 40S ribosomal protein S17
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