IL_9XTC_033

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9XTC|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTC_033 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1753

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9XTC|1|A|U|662
9XTC|1|A|A|663
9XTC|1|A|G|664
9XTC|1|A|A|665
9XTC|1|A|G|666
*
9XTC|1|A|U|740
9XTC|1|A|G|741
9XTC|1|A|G|742
9XTC|1|A|A|743

Current chains

Chain A

RNA (1176-MER)

Nearby chains

Chain F

Small ribosomal subunit protein bS6, non-modified isoform

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18