IL_9XTC_049

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9XTC_049 not in the Motif Atlas

Geometric match to IL_8GLP_051

Geometric discrepancy: 0.2504

The information below is about IL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9XTC|1|A|A|1430
9XTC|1|A|A|1431
9XTC|1|A|G|1432
9XTC|1|A|A|1433
9XTC|1|A|A|1434
9XTC|1|A|G|1435
*
9XTC|1|A|C|1466
9XTC|1|A|C|1467
9XTC|1|A|A|1468
9XTC|1|A|C|1469
9XTC|1|A|U|1470

Current chains

Chain A

RNA (1176-MER)

Nearby chains

Chain T

30S ribosomal protein S20