IL_9Y4G_103

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9Y4G|1|A6|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_103 not in the Motif Atlas

Homologous match to IL_8GLP_108

Geometric discrepancy: 0.1207

The information below is about IL_8GLP_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.3

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9Y4G|1|A6|C|2867
9Y4G|1|A6|G|2868
9Y4G|1|A6|U|2869
9Y4G|1|A6|A|2870
9Y4G|1|A6|A|2871
9Y4G|1|A6|C|2872
*
9Y4G|1|A6|G|2877
9Y4G|1|A6|G|2878
9Y4G|1|A6|A|2879
9Y4G|1|A6|U|2880
9Y4G|1|A6|A|2881
9Y4G|1|A6|A|2882
9Y4G|1|A6|G|2883

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S ribosomal protein L41

Chain Cp

60S ribosomal protein L37a