IL_9Y4G_145

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACAUUU*ACCAU

Length

11 nucleotides

Bulged bases

9Y4G|1|A6|C|4670, 9Y4G|1|A6|C|4671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Y4G_145 not in the Motif Atlas

Homologous match to IL_8GLP_317

Geometric discrepancy: 0.322

The information below is about IL_8GLP_317

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9Y4G|1|A6|A|4624
9Y4G|1|A6|C|4625
9Y4G|1|A6|A|4626
9Y4G|1|A6|U|4627
9Y4G|1|A6|U|4628
9Y4G|1|A6|U|4629
*
9Y4G|1|A6|A|4669
9Y4G|1|A6|C|4670
9Y4G|1|A6|C|4671
9Y4G|1|A6|A|4672
9Y4G|1|A6|U|4673

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CV

60S ribosomal protein L23

Chain CW

60S ribosomal protein L24