IL_9Y79_173
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Y79_173 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1158
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9Y79|1|d|C|71
9Y79|1|d|G|72
9Y79|1|d|A|73
9Y79|1|d|U|74
9Y79|1|d|G|75
9Y79|1|d|G|76
9Y79|1|d|U|77
9Y79|1|d|A|78
9Y79|1|d|G|79
*
9Y79|1|d|C|97
9Y79|1|d|G|98
9Y79|1|d|A|99
9Y79|1|d|G|100
9Y79|1|d|A|101
9Y79|1|d|G|102
9Y79|1|d|U|103
9Y79|1|d|A|104
9Y79|1|d|G|105
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL25
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L30
- Chain v
- 50S ribosomal protein L16
Coloring options: