J3_11GG_006

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUAG*CGCAG*CGAUAAG

Length

16 nucleotides

Bulged bases

11GG|1|C|U|865, 11GG|1|C|A|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_006 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.1829

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

11GG|1|C|C|820
11GG|1|C|U|821
11GG|1|C|A|822
11GG|1|C|G|823
*
11GG|1|C|C|851
11GG|1|C|G|852
11GG|1|C|C|853
11GG|1|C|A|854
11GG|1|C|G|855
*
11GG|1|C|C|862
11GG|1|C|G|863
11GG|1|C|A|864
11GG|1|C|U|865
11GG|1|C|A|866
11GG|1|C|A|867
11GG|1|C|G|868

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS21

Chain D

Small ribosomal subunit protein uS2

Chain o

Small ribosomal subunit protein uS8