J3_11GG_013
3D structure
- PDB id
- 11GG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11GG_013 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.2323
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
11GG|1|C|C|1057
11GG|1|C|G|1058
11GG|1|C|U|1059
11GG|1|C|C|1060
11GG|1|C|A|1061
11GG|1|C|G|1062
*
11GG|1|C|C|1101
11GG|1|C|G|1102
11GG|1|C|C|1103
11GG|1|C|A|1104
11GG|1|C|A|1105
11GG|1|C|C|1106
11GG|1|C|C|1107
*
11GG|1|C|G|1181
11GG|1|C|A|1182
11GG|1|C|U|1183
11GG|1|C|G|1184
11GG|1|C|A|1185
11GG|1|C|C|1186
11GG|1|C|G|1187
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS2
- Chain E
- Small ribosomal subunit protein uS3
- Chain G
- Small ribosomal subunit protein uS5
- Chain p
- Small ribosomal subunit protein uS9
- Chain q
- Small ribosomal subunit protein uS10
- Chain v
- Small ribosomal subunit protein uS14
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