J3_11GG_029

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

11GG|1|I|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_029 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.2111

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

11GG|1|I|C|2091
11GG|1|I|U|2092
11GG|1|I|G|2093
*
11GG|1|I|C|2196
11GG|1|I|U|2197
11GG|1|I|A|2198
11GG|1|I|A|2199
11GG|1|I|C|2200
*
11GG|1|I|G|2223
11GG|1|I|G|2224
11GG|1|I|A|2225
11GG|1|I|C|2226
11GG|1|I|A|2227
11GG|1|I|G|2228

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain P

Large ribosomal subunit protein bL9

Chain f

50S ribosomal protein L28