J3_11GG_031

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

11GG|1|I|A|2518, 11GG|1|I|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_031 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.2435

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

11GG|1|I|C|2517
11GG|1|I|A|2518
11GG|1|I|U|2519
11GG|1|I|C|2520
*
11GG|1|I|G|2545
11GG|1|I|U|2546
11GG|1|I|A|2547
*
11GG|1|I|U|2561
11GG|1|I|U|2562
11GG|1|I|U|2563
11GG|1|I|A|2564
11GG|1|I|A|2565
11GG|1|I|A|2566
11GG|1|I|G|2567

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL3

Chain S

Large ribosomal subunit protein uL14